| Protein
Structure Resources |
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| Servers |
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Robetta
is a full-chain protein structure prediction server. |
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Rosetta
Design |
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Superfamily
is a Hidden Markov Model library and genome assignments server. |
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The aim of the ProFunc
server is to help identify the likely biochemical function of a
protein from its three-dimensional structure. |
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BLAST
- The Basic Local Alignment Search Tool (BLAST) finds regions of
local similarity between sequences. The program compares nucleotide
or protein sequences to sequence databases and calculates the statistical
significance of matches. |
FFAS03 |
FFAS03
- The FFAS03 server provides an interface to the third generation
of the profile-profile alignment and fold recognition algorithm
FFAS. |
Proteome
Analyst
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Proteome Analyst
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PCE
- Protein Continium electrostatics |
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APBS (Adaptive
Poisson-Boltzmann Solver) is a software package for the numerical
solution of the Poisson-Boltzmann equation, one of the most popular
continuum models for describing electrostatic interactions between
molecular solutes in salty, aqueous media.
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SCALI
- Structural Core ALIgnment of proteins |
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| Centers |
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The
Protein Structure Initiative
(PSI) is a federal, university, and industry effort to reduce the
costs and lessen the time it takes to determine a three-dimensional
protein structure. The long-range goal of the PSI is to make the
three-dimensional atomic-level structures of most proteins easily
obtainable from knowledge of their corresponding DNA sequences.
PSI Centers |
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Bioscience Division integrates
biology, chemistry, physics, and computational sciences to build
a strong scientific and technological base for addressing the complex
problems that face the nation. |
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The
W.M. Keck Center for Computational and Structural Biology
Mission: To provide a world-class
environment for interdisciplinary research training at the interface
between biological and biomedical sciences and the computational,
physical, mathematical and engineering sciences.
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UCLA-DOE
Laboratory of Structural Biology and Molecular Medicine (LSBMM),
the Laboratory has as its revised mission: (1) The partnering of
structural and computation biology in the determination of folds
for proteins in genomes, and the analysis of function and interactions
from genome sequences. (2) The development of molecular nuclear
medicine, including new diagnostic biological imaging procedures
and their relationship to drug therapies to improve the quality
of life. |
| PNNL-MSCF |
Pacific Northwest National Lab - Molecular Science Computing Facility |
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SNL
- Computational Biology at Sandia National Labs |
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SIB
- Swiss Institute of Bioinformatics |
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C2B2
- Center for Computational Biology and Bioinformatics
at Columbia University. |
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The Scripps Research
Institute |
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National Center for Research Resources: Biomedical
Technology Research Resources Directory |
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Beckman Institute |
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PNNL-EMSL |
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PNNL-EMSL-Molecular
Science Computing Facility |
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Quantum Protein Centre |
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